Watching a puppet show can teach you something about how estrogen works in the body, according to scientists whose research could open the door to new strategies for regulating the hormone — which could help prevent breast cancer and other diseases.
Just as a puppeteer manipulates strings, an estrogen receptor ,
once it binds to a hormone molecule, manipulates its structure to
access a specific DNA site, where it will either enhance or inhibit gene
expression. Estrogen receptors play a crucial role in breast cancer,
making them therapeutic targets for tumor growth inhibition.
A study published in the journal PNAS explains the link between the particular structure of estrogen receptor alpha proteins and how these receptors function at the molecular level.
“This
molecule has two regions or domains that normally are not touching each
other,” said the study’s corresponding author. “Instead, they're
separated by two stringlike structures. The puzzle was, how do these two
domains communicate with each other? How is the information that a
hormone is bound conveyed to the domain that binds DNA?”
Using software called AWSEM that
his research group developed to predict the structure and dynamics of
proteins, the team found estrogen receptor hormone regulation is
controlled by a previously unknown strategy of molecular communication.
“For
most of my career, the dominant viewpoint about how protein molecules
function has been that they're fairly rigid objects and that their
molecular mechanics involved interactions like those in simple machines,
using levers and hinges. So, it's very weird when you have these
stringy structures because they don't seem to work like that,” the
author said.
The previous research uncovered that stringlike protein structures can act like the arms of an octopus.
“This
stringy octopus’ arm finds something, grabs onto it and then organizes
itself,” the author said. “That's a mechanism we discovered a long time
ago that we called fly-casting. It has been seen in many systems.”
In
the case of the estrogen receptor protein, the fact that the different
areas of the molecule are connected by two stringlike structures made it
difficult to account for how the region of the molecule that binds to
the hormone, known as the ligand binding domain, communicates with the
region of the molecule that attaches to the DNA, or the DNA binding
domain.
“By
doing a simulation of the dynamics of the molecule, what we discovered
was that when the ligand binding domain changed its structure, it
rotated and moved the strings a little bit farther apart. In so doing,
it shortened the strings connecting it to the other domain, bringing it
into closer contact with the DNA. This is like the way a puppet master
would manipulate a marionette,” the author said.
“To
our knowledge, no one has ever thought about this idea that the two
strings basically cooperated with each other to work like a marionette,”
the author added.
Estrogen receptor mutations are linked to numerous other diseases and types of cancer besides breast cancer.
“It
turns out that some of the mutations that disable the estrogen receptor
in cancers occur exactly in this hinge region,” the author said of the
region composed of the stringlike structures. “That is something that we
now can begin to analyze. We think it'll give insight to the people who
work on the pharmacology side about why that region in the estrogen
receptor is disabled in some cases and not in others.”
The author said the finding could help reshape understanding of how hormone receptor molecules work more broadly.
“We
think that this may be a very common functional mechanism in protein
dynamics,” the author said. “There are a lot of other hormone receptors
that have a similar organization of structured domains connected by
strings.”
The question of protein structure prediction, sometimes called the protein folding problem, has garnered a lot of attention in recent years due to the development of AlphaFold, a system by Google AI offshoot DeepMind that predicts the 3D structure of proteins based on their amino acid sequence.
https://www.pnas.org/doi/10.1073/pnas.2216906120